Tresor
Tools for simulating conventional and single-cell transcriptome sequencing readouts.
Mar 17, 2025
UMIche
A comprehensive analysis platform that uses simulated or real sequencing data to improve molecular quantification algorithms.
Mar 16, 2025
mclUMI
The Markov clustering algorithm is used to remove PCR artifacts in sequencing molecules labelled with single-UMI tags.
Mar 16, 2025
SVLearn: a dual-reference machine learning approach enables accurate cross-species genotyping of structural variants
intro coming soon…
Mar 11, 2025
Enhancing single-cell transcriptomics using interposed anchor oligonucleotide sequences
intro coming soon…
Jan 1, 2025
ResimPy
ResimPy provides a scalable interface for users via Python to simulate massive reads of varying sequencing technologies, in order to avoid the time-consuming nature of experimental trials. Simulated reads can have the UMI- barcode- primer-, or spacer-featured composition.
Feb 5, 2024
Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules
intro coming soon…
Jan 1, 2024